One step forward

스탠포드 딥러닝 튜토리얼 (설명 잘 되어 있음)http://deeplearning.stanford.edu/tutorial/ Deep learning 관련 북마크 많은 사이트http://feeltering.com/oopsoopskeke/collection/5 머신러닝 패키지http://torch.ch/ Kerashttps://keras.io/#getting-started-30-seconds-to-keras Andrew Ng 강의https://www.youtube.com/watch?v=PPLop4L2eGk&list=PLLssT5z_DsK-h9vYZkQkYNWcItqhlRJLN

Acceleration and parallelizationhttp://www.gromacs.org/Documentation/Acceleration_and_parallelization Getting good performance from mdrunhttp://manual.gromacs.org/documentation/5.1/user-guide/mdrun-performance.html Performance checklisthttp://www.gromacs.org/Documentation/Performance_checklist mpirun -np 64 --hostfile hostfile.txt gmx_mpi mdrun -v -deffnm step6.5_equilibration -pin on -npme 4

요즘에 알파고 때문에 난리인 Deep learning 또는 Machine learning 관련 링크.. 알파고 개발자 데미스 하사비스 초청강연 인공지능과 미래http://www.tjmbc.co.kr/0506/player/id/4028 Deep Mind에서 나온 논문Playing Atari with Deep Reinforcement Learninghttp://arxiv.org/pdf/1312.5602v1.pdf Human-level control through deep reinforcement learninghttp://www.nature.com/nature/journal/v518/n7540/pdf/nature14236.pdf Mastering the game of Go with deep neural ne..

From https://mail.python.org/pipermail/tutor/2002-March/012903.html[Tutor] how to install python on unix machine if you don't have rootDavid Primmer dave@primco.org Fri, 15 Mar 2002 23:30:25 -0800Previous message: [Tutor] getting started on pythonNext message: [Tutor] Re: getting started on pythonMessages sorted by: [ date ] [ thread ] [ subject ] [ author ]You don't need root but you do need wr..

HOLEhttp://s3.smartsci.uk/hole2/doc/index.html Transmembrane protein pore radius analysis tool

Wikipediahttps://en.wikipedia.org/wiki/Fatty_acid VMD analysishttp://www.ks.uiuc.edu/Training/CaseStudies/pdfs/bilayer.pdf Paper(carbon numbering)Molecular dynamics simulations of charged and neutral lipid bilayers: treatment of electrostatic interactions

Tutorial pointhttp://www.tutorialspoint.com/python Python Practice bookhttp://anandology.com/python-practice-book/iterators.html 한글 Wikidocshttps://wikidocs.net/14 Biopython 관련 자료http://fenyolab.org/ibb2015/pdf/IBB2015_homework4_biopython.pdf

Analyze Big DCD Fielshttp://www.ks.uiuc.edu/Research/vmd/script_library/scripts/bigdcd/ MDAnalysis(Python package)http://pythonhosted.org/MDAnalysis/index.html1. Overview over MDAnalysis2. Selection Commands3. Analysis modules4. Topology modules5. Coordinates modules6. Selection exporters7. Core modules8. Visualization modules9. MDAnalysis library10. Version information for MDAnalysis — MDAnalys..

NAMDMembrane related researcheshttp://bionano.physics.illinois.edu/Tutorials/ Case studieshttp://www.ks.uiuc.edu/Training/CaseStudies/

Mounting sharing folder from Windows to Linux1. Make sure that the target folder is shared on VirtualBox setting.Refer below (http://www.liberiangeek.net/2012/05/access-virtualbox-shared-folder-from-ubuntu-12-04-precise-pangolin-guest-machine/)If you’ve been following this blog, then you probably know a thing or two about VirtualBox. That’s because we’ve written a lot about it. If you don’t know..